When Crohn’s Disease Causes Joint Pain: Here’s What You Need to Know

“The connective tissue that connects the bones and muscles becomes inflamed, sort of like [other types of] arthritis,” says Arun Swaminath, MD, the director of the inflammatory bowel diseases program at Lenox Hill Hospital in New York City.
But what does a disease that comes from the gut have to do with joint pain? Here’s what experts say about the connection.
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The Connection Between Crohn’s Disease and Joint Pain
The connection between the gut and the joints that causes this pain is not yet fully understood, says Katherine Falloon, MD, a gastroenterologist at Cleveland Clinic. “A genetic predisposition, overactive inflammatory cells, and the makeup of the microbiome have all been explored as potential causes,” she says.
“If the bacteria from the gut cross into where they do not belong, the immune system’s job is to create inflammation to stop an attack, and the joints are collateral damage,” says Swaminath.
How to Treat Joint Pain From Crohn’s Disease
Management of joint pain in patients with IBD is not always straightforward, says Dr. Falloon, and may require a multipronged approach. That means working not only with a gastroenterologist but with a rheumatologist as well.
But depending on how painful or frequently the joint pain flares up, your doctor may recommend one or more of the following therapies.
Physical Therapy to Keep You Moving
Working with a physical therapist, who can teach you range of motion and strengthening exercises, can be effective for managing pain, says Falloon.
Consult with your doctor before starting a new exercise program.
Prescription Medications That Control Inflammation
“We're focused on getting the IBD under control, and if we've got the drug that does that, chances are that patient is going to do really well from the joint perspective,” says Swaminath.
Other options are biologic drugs, which reduce inflammation and can help prevent joint damage, says Falloon. They are also commonly used to treat a number of types of inflammatory arthritis. But ask your doctor which one is right for you, as some biologics aren’t approved for IBD. The Arthritis Foundation has a list of more than two dozen available biologics for arthritis, along with their benefits and risks.
Over-the-Counter Medications, Though Some May Cause Irritation
Corticosteroid Therapy, but Only for the Short-Term
“Steroids are a short-term solution that can often be quite effective for both gut and joint symptoms,” says Swaminath. “We might use steroids to make a patient quickly comfortable.”
Supplements, Though It’s Still Not Clear if They Work
“Supplements are completely unregulated, and the claims that they make can be founded on very little data, so it makes it quite difficult to know if they will help,” says Swaminath.
Resources We Trust
- Cleveland Clinic: Crohn’s Disease
- Mayo Clinic: Crohn’s Disease: Symptoms & Causes
- Crohn’s & Colitis Foundation: Extraintestinal Complications of IBD
- Crohn’s and Colitis Canada: Joint Inflammation and Arthritis
- Harvard Health Publishing: Arthritis Associated With Inflammatory Bowel Disease
- Joint Inflammation and Arthritis. Crohn’s and Colitis Canada.
- Arthritis. Cleveland Clinic. November 13, 2023.
- Sheth T et al. Musculoskeletal Manifestations in Inflammatory Bowel Disease: A Revisit in Search of Immunopathophysiological Mechanisms. Journal of Clinical Gastroenterology. April 2014.
- Crohn’s Disease and Joint Pain: What the Connection Really Means for Your Body. Hackensack Meridian Health. February 18, 2026.
- Inflammatory Bowel Disease. University of Washington Medicine.
- Wang W et al. Physical Therapy as a Promising Treatment for Osteoarthritis: A Narrative Review. Frontiers in Physiology. October 13, 2022.
- Girgis P et al. Advancements in Targeted Therapies for the Management of Crohn’s Disease: A Comprehensive Review. Cureus. June 5, 2024.
- Gordon JK. DMARDS: What You Should Know About Taking Disease-Modifying Anti-Rheumatic Drugs. Hospital for Special Surgery. December 13, 2024.
- Okafor PN. NSAID Use and the Risk of IBD Exacerbations: Fact or Fiction? American College of Gastroenterology. December 14, 2022.
- Understanding IBD Medications and Side Effects. Crohn’s & Colitis Foundation. October 2024.
- Corticosteroids. Crohn’s & Colitis Foundation.
- Glucosamine and Chondroitin for Osteoarthritis: What You Need To Know. National Center for Complementary and Integrative Health. October 2023.
- Does Taking Turmeric for Arthritis Really Work? Beaufort Memorial Hospital. March 17, 2022.
- Ehrhardt N et al. 5 Supplements for Joint Health. Stanford Lifestyle Medicine. August 23, 2025.
- Zeng L et al. Safety and Efficacy of Probiotic Supplementation in 8 Types of Inflammatory Arthritis: A Systematic Review and Meta-Analysis of 34 Randomized Controlled Trials. Frontiers in Immunology. September 22, 2022.

Yuying Luo, MD
Medical Reviewer
Yuying Luo, MD, is an assistant professor of medicine at Mount Sinai West and Morningside in New York City. She aims to deliver evidence-based, patient-centered, and holistic care ...

Beth W. Orenstein
Author
Beth W. Orenstein is a freelance writer for HealthDay, Radiology Today, the Living Well section of The American Legion Magazine, St. Luke’s University Health Network, and others. S...